SNP Profiles of POUND 2A View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC	AA
1._GC-01-093-5-10	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC	AA
2._GC-01-093-5-10	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC	AA
3._POUND_2_/A	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC	AA
4._POUND_2_/A	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
5._GC-01-093-5-10	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
6._GC-01-093-5-10	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
7._GC-01-093-5-10	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
8._GC-01-093-5-10	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
9._GC-01-093-5-10	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
10._GC-01-093-5-10	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
11._POUND_2_/A	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
12._POUND_2_/A	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
13._POUND_2_/A	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
14._POUND_2_/A	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
15._POUND_2_/A	AA	CC	TT	TT	TT	TT	CC	CC	AA	AG	CC	GG	TT	AA
16._POUND_2_/A	AA	CC	TT	TT	TT	TT	CC	_	AA	AG	CC	GG	TT	AA
17._GC-01-93-5-10	AA	GG	AA	AA	AA	AA	_	_	AA	AG	GG	GG	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	GG	GG
1._GC-01-093-5-10	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	GG	GG
2._GC-01-093-5-10	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	GG	GG
3._POUND_2_/A	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA	GG	GG
4._POUND_2_/A	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
5._GC-01-093-5-10	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
6._GC-01-093-5-10	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
7._GC-01-093-5-10	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
8._GC-01-093-5-10	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
9._GC-01-093-5-10	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
10._GC-01-093-5-10	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
11._POUND_2_/A	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
12._POUND_2_/A	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
13._POUND_2_/A	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
14._POUND_2_/A	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
15._POUND_2_/A	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
16._POUND_2_/A	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	TT	CC	AA	GG
17._GC-01-93-5-10	GG	GG	GG	CC	CC	_	GG	AA	GG	CC	_	CC	_	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
1._GC-01-093-5-10	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
2._GC-01-093-5-10	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
3._POUND_2_/A	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
4._POUND_2_/A	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
5._GC-01-093-5-10	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
6._GC-01-093-5-10	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
7._GC-01-093-5-10	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
8._GC-01-093-5-10	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
9._GC-01-093-5-10	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
10._GC-01-093-5-10	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
11._POUND_2_/A	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
12._POUND_2_/A	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
13._POUND_2_/A	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
14._POUND_2_/A	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
15._POUND_2_/A	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
16._POUND_2_/A	AA	CC	AA	_	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X	X_X
17._GC-01-93-5-10	AA	GG	AA	GG	AA	GG	CC	CC	TT	GG	X_X	X_X	X_X	X_X

Input profile: POUND_2_/A

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Mars Center for Cocoa Science, Brazil

Location: 1510 5 > FP

Dapeng Zhang, 2016

1._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

2._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

3._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1510 13

Dapeng Zhang, 2016

4._POUND_2_/A

59.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1510 9 > FP

Dapeng Zhang, 2016

5._POUND_2_/A GC-01-093-5-10

59.2 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

6._POUND_2_/A GC-01-093-5-10

59.2 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

7._POUND_2_/A GC-01-093-5-10

59.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

8._POUND_2_/A GC-01-093-5-10

59.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

9._POUND_2_/A GC-01-093-5-10

59.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._POUND_2_/A GC-01-093-5-10

59.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._POUND_2_/A

59.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1510 7 > FP

Dapeng Zhang, 2016

12._POUND_2_/A

59.2 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 4 > FP

Dapeng Zhang, 2016

13._POUND_2_/A

59.2 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 11

Dapeng Zhang, 2016

14._POUND_2_/A

59.2 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 2

Dapeng Zhang, 2016

15._POUND_2_/A

59.2 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._POUND_2_/A

56.9 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A75 T3

Dapeng Zhang, 2016

17._POUND_2_/A GC-01-93-5-10

28.8 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 10, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1414	5	TcSNP1270
6	TcSNP1253	7	TcSNP1165	8	TcSNP1144	9	TcSNP1075	10	TcSNP1062
11	TcSNP1060	12	TcSNP998	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25